Workaround for Observables vs AbstractPlotting clash #11
Description
I updated ComplexPhasePortrait today, and it failed due to some package versioning snafu:
_
_ _ _(_)_ | Documentation: https://docs.julialang.org
(_) | (_) (_) |
_ _ _| |_ __ _ | Type "?" for help, "]?" for Pkg help.
| | | | | | |/ _` | |
| | |_| | | | (_| | | Version 1.3.1 (2019-12-30)
_/ |\__'_|_|_|\__'_| | Official https://julialang.org/ release
|__/ |
julia> using Pkg
julia> pkg"activate ."
Activating new environment at `/private/tmp/foo/Project.toml`
julia> pkg"add ComplexPhasePortrait"
Updating registry at `~/.julia/registries/General`
Updating git-repo `https://github.com/JuliaRegistries/General.git`
Updating registry at `~/.julia/registries/MolSim`
Updating git-repo `https://github.com/JuliaMolSim/MolSim.git`
Resolving package versions...
Updating `/private/tmp/foo/Project.toml`
[38ac1a67] + ComplexPhasePortrait v0.1.0
Updating `/private/tmp/foo/Manifest.toml`
[621f4979] + AbstractFFTs v0.5.0
[537997a7] + AbstractPlotting v0.9.10
[13072b0f] + AxisAlgorithms v1.0.0
[39de3d68] + AxisArrays v0.3.3
[b99e7846] + BinaryProvider v0.5.8
[6e34b625] + Bzip2_jll v1.0.6+1
[aafaddc9] + CatIndices v0.2.1
[a2cac450] + ColorBrewer v0.4.0
[3da002f7] + ColorTypes v0.8.1
[c3611d14] + ColorVectorSpace v0.8.3
[5ae59095] + Colors v0.9.6
[34da2185] + Compat v2.2.0
[e66e0078] + CompilerSupportLibraries_jll v0.2.0+1
[38ac1a67] + ComplexPhasePortrait v0.1.0
[ed09eef8] + ComputationalResources v0.3.1
[d38c429a] + Contour v0.5.1
[150eb455] + CoordinateTransformations v0.5.0
[dc8bdbbb] + CustomUnitRanges v1.0.0
[9a962f9c] + DataAPI v1.1.0
[864edb3b] + DataStructures v0.17.10
[e2d170a0] + DataValueInterfaces v1.0.0
[b4f34e82] + Distances v0.8.2
[ffbed154] + DocStringExtensions v0.8.1
[c87230d0] + FFMPEG v0.3.0
[b22a6f82] + FFMPEG_jll v4.1.0+2
[4f61f5a4] + FFTViews v0.3.1
[7a1cc6ca] + FFTW v1.2.0
[f5851436] + FFTW_jll v3.3.9+4
[5789e2e9] + FileIO v1.2.2
[53c48c17] + FixedPointNumbers v0.6.1
[b38be410] + FreeType v2.1.1
[d7e528f0] + FreeType2_jll v2.10.1+1
[663a7486] + FreeTypeAbstraction v0.4.2
[559328eb] + FriBidi_jll v1.0.5+2
[4d00f742] + GeometryTypes v0.7.9
[a2bd30eb] + Graphics v1.0.1
[bbac6d45] + IdentityRanges v0.3.1
[2803e5a7] + ImageAxes v0.6.4
[a09fc81d] + ImageCore v0.8.11
[51556ac3] + ImageDistances v0.2.7
[6a3955dd] + ImageFiltering v0.6.9
[6218d12a] + ImageMagick v1.1.2
[c73af94c] + ImageMagick_jll v6.9.10-12+0
[bc367c6b] + ImageMetadata v0.8.0
[787d08f9] + ImageMorphology v0.2.5
[4e3cecfd] + ImageShow v0.2.3
[02fcd773] + ImageTransformations v0.8.3
[916415d5] + Images v0.19.3
[9b13fd28] + IndirectArrays v0.5.1
[1d5cc7b8] + IntelOpenMP_jll v2018.0.3+0
[a98d9a8b] + Interpolations v0.12.5
[8197267c] + IntervalSets v0.3.2
[c8e1da08] + IterTools v1.3.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.0
[aacddb02] + JpegTurbo_jll v2.0.1+0
[c1c5ebd0] + LAME_jll v3.100.0+0
[dd192d2f] + LibVPX_jll v1.8.1+1
[89763e89] + Libtiff_jll v4.0.10+0
[856f044c] + MKL_jll v2019.0.117+2
[1914dd2f] + MacroTools v0.5.4
[dbb5928d] + MappedArrays v0.2.2
[e1d29d7a] + Missings v0.4.3
[77ba4419] + NaNMath v0.3.3
[510215fc] + Observables v0.3.1
[6fe1bfb0] + OffsetArrays v0.11.4
[e7412a2a] + Ogg_jll v1.3.3+0
[458c3c95] + OpenSSL_jll v1.1.1+1
[efe28fd5] + OpenSpecFun_jll v0.5.3+2
[91d4177d] + Opus_jll v1.3.1+0
[bac558e1] + OrderedCollections v1.1.0
[19eb6ba3] + Packing v0.3.0
[5432bcbf] + PaddedViews v0.5.1
[69de0a69] + Parsers v0.3.11
[995b91a9] + PlotUtils v0.6.3
[b3c3ace0] + RangeArrays v0.3.2
[c84ed2f1] + Ratios v0.4.0
[a223df75] + Reactive v0.8.3
[3cdcf5f2] + RecipesBase v0.7.0
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v1.0.1
[6038ab10] + Rotations v0.13.0
[992d4aef] + Showoff v0.3.1
[73760f76] + SignedDistanceFields v0.4.0
[699a6c99] + SimpleTraits v0.9.1
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.10.0
[90137ffa] + StaticArrays v0.12.1
[2913bbd2] + StatsBase v0.32.1
[09ab397b] + StructArrays v0.4.2
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v1.0.2
[06e1c1a7] + TiledIteration v0.2.4
[1cfade01] + UnicodeFun v0.4.1
[efce3f68] + WoodburyMatrices v0.5.1
[83775a58] + Zlib_jll v1.2.11+8
[3161d3a3] + Zstd_jll v1.4.4+0
[0ac62f75] + libass_jll v0.14.0+0
[f638f0a6] + libfdk_aac_jll v0.1.6+1
[b53b4c65] + libpng_jll v1.6.37+2
[f27f6e37] + libvorbis_jll v1.3.6+2
[1270edf5] + x264_jll v2019.5.25+1
[dfaa095f] + x265_jll v3.0.0+0
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Precompiling project...
julia> using ComplexPhasePortrait
[ Info: Precompiling ComplexPhasePortrait [38ac1a67-8e16-5889-9a62-b2c9995eb50f]
WARNING: Method definition convert(Type{#s55} where #s55<:(Observables.Observable{T} where T), Any) in module Observables at /Users/rpolkinghorne/.julia/packages/Observables/0wrF6/src/Observables.jl:52 overwritten in module AbstractPlotting at /Users/rpolkinghorne/.julia/packages/AbstractPlotting/B5nOF/src/types.jl:288.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition copy(Observables.Observable{T}) where {T} in module Observables at /Users/rpolkinghorne/.julia/packages/Observables/0wrF6/src/Observables.jl:30 overwritten in module AbstractPlotting at /Users/rpolkinghorne/.julia/packages/AbstractPlotting/B5nOF/src/interaction/nodes.jl:15.
** incremental compilation may be fatally broken for this module **
ERROR: LoadError: LoadError: MethodError: convert(::Type{Observables.Observable}, ::Observables.Observable{Any}) is ambiguous. Candidates:
convert(::Type{Observables.Observable}, x::Observables.AbstractObservable) in Observables at /Users/rpolkinghorne/.julia/packages/Observables/0wrF6/src/Observables.jl:41
convert(::Type{T}, x::T) where T<:Observables.Observable in AbstractPlotting at /Users/rpolkinghorne/.julia/packages/AbstractPlotting/B5nOF/src/types.jl:289
Possible fix, define
convert(::Type{Observables.Observable}, ::Observables.Observable)
Stacktrace:
[1] setindex!(::Dict{Symbol,Observables.Observable}, ::Observables.Observable{Any}, ::Symbol) at ./dict.jl:380
[2] Dict{Symbol,Observables.Observable}(::Base.Generator{Base.Iterators.Pairs{Symbol,Array{T,1} where T,NTuple{4,Symbol},NamedTuple{(:color, :marker, :linestyle, :side),Tuple{Array{ColorTypes.RGB{Float64},1},Array{Symbol,1},Array{Union{Nothing, Symbol},1},Array{Symbol,1}}}},typeof(AbstractPlotting.node_pairs)}) at ./dict.jl:103
[3] #Attributes#6 at /Users/rpolkinghorne/.julia/packages/AbstractPlotting/B5nOF/src/types.jl:292 [inlined]
[4] (::Core.var"#kw#Type")(::NamedTuple{(:color, :marker, :linestyle, :side),Tuple{Array{ColorTypes.RGB{Float64},1},Array{Symbol,1},Array{Union{Nothing, Symbol},1},Array{Symbol,1}}}, ::Type{AbstractPlotting.Attributes}) at ./none:0
[5] top-level scope at /Users/rpolkinghorne/.julia/packages/AbstractPlotting/B5nOF/src/theming.jl:16
[6] include at ./boot.jl:328 [inlined]
[7] include_relative(::Module, ::String) at ./loading.jl:1105
[8] include at ./Base.jl:31 [inlined]
[9] include(::String) at /Users/rpolkinghorne/.julia/packages/AbstractPlotting/B5nOF/src/AbstractPlotting.jl:1
[10] top-level scope at /Users/rpolkinghorne/.julia/packages/AbstractPlotting/B5nOF/src/AbstractPlotting.jl:37
[11] include at ./boot.jl:328 [inlined]
[12] include_relative(::Module, ::String) at ./loading.jl:1105
[13] include(::Module, ::String) at ./Base.jl:31
[14] top-level scope at none:2
[15] eval at ./boot.jl:330 [inlined]
[16] eval(::Expr) at ./client.jl:425
[17] top-level scope at ./none:3
in expression starting at /Users/rpolkinghorne/.julia/packages/AbstractPlotting/B5nOF/src/theming.jl:16
in expression starting at /Users/rpolkinghorne/.julia/packages/AbstractPlotting/B5nOF/src/AbstractPlotting.jl:37
ERROR: LoadError: Failed to precompile AbstractPlotting [537997a7-5e4e-5d89-9595-2241ea00577e] to /Users/rpolkinghorne/.julia/compiled/v1.3/AbstractPlotting/6fydZ_eRoYG.ji.
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1283
[3] _require(::Base.PkgId) at ./loading.jl:1024
[4] require(::Base.PkgId) at ./loading.jl:922
[5] require(::Module, ::Symbol) at ./loading.jl:917
[6] include at ./boot.jl:328 [inlined]
[7] include_relative(::Module, ::String) at ./loading.jl:1105
[8] include(::Module, ::String) at ./Base.jl:31
[9] top-level scope at none:2
[10] eval at ./boot.jl:330 [inlined]
[11] eval(::Expr) at ./client.jl:425
[12] top-level scope at ./none:3
in expression starting at /Users/rpolkinghorne/.julia/packages/ComplexPhasePortrait/k0t2L/src/ComplexPhasePortrait.jl:3
ERROR: Failed to precompile ComplexPhasePortrait [38ac1a67-8e16-5889-9a62-b2c9995eb50f] to /Users/rpolkinghorne/.julia/compiled/v1.3/ComplexPhasePortrait/tkJfA_eRoYG.ji.
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1283
[3] _require(::Base.PkgId) at ./loading.jl:1024
[4] require(::Base.PkgId) at ./loading.jl:922
[5] require(::Module, ::Symbol) at ./loading.jl:917
My workaround was to force the versions that were used in the last successful test on Travis:
julia> pkg"add Observables@0.2.3 AbstractPlotting@0.9.17"
Resolving package versions...
Updating `~/.julia/environments/v1.3/Project.toml`
[537997a7] + AbstractPlotting v0.9.17
[510215fc] + Observables v0.2.3
Updating `~/.julia/environments/v1.3/Manifest.toml`
[85c772de] + AbstractNumbers v0.2.1
[537997a7] ↑ AbstractPlotting v0.9.10 ⇒ v0.9.17
[6e34b625] - Bzip2_jll v1.0.6+1
[35d6a980] + ColorSchemes v3.5.0
[c87230d0] ↓ FFMPEG v0.3.0 ⇒ v0.2.4
[b22a6f82] - FFMPEG_jll v4.1.0+2
[d7e528f0] - FreeType2_jll v2.10.1+1
[559328eb] - FriBidi_jll v1.0.5+2
[c1c5ebd0] - LAME_jll v3.100.0+0
[dd192d2f] - LibVPX_jll v1.8.1+1
[510215fc] ↓ Observables v0.3.1 ⇒ v0.2.3
[e7412a2a] - Ogg_jll v1.3.3+0
[458c3c95] - OpenSSL_jll v1.1.1+1
[91d4177d] - Opus_jll v1.3.1+0
[0ac62f75] - libass_jll v0.14.0+0
[f638f0a6] - libfdk_aac_jll v0.1.6+1
[f27f6e37] - libvorbis_jll v1.3.6+2
[1270edf5] - x264_jll v2019.5.25+1
[dfaa095f] - x265_jll v3.0.0+0
julia> pkg"precompile"
Precompiling project...
Precompiling Observables
[ Info: Precompiling Observables [510215fc-4207-5dde-b226-833fc4488ee2]
Precompiling AbstractPlotting
[ Info: Precompiling AbstractPlotting [537997a7-5e4e-5d89-9595-2241ea00577e]
Precompiling ComplexPhasePortrait
[ Info: Precompiling ComplexPhasePortrait [38ac1a67-8e16-5889-9a62-b2c9995eb50f]
julia> using ComplexPhasePortrait
julia>
Hopefully this will be fixed soon. If not, it might be worth adding some explicit compatibility rules.