The barplot is too squeezed

[AlexSongh]

Hi I was wondering if there is a flag option that we can adjust the size of the bar plots (for example bar width, and legend position etc?)

I tried --scaleplotwidth 2, --scaleplotwidth 4, etc but it gives me only partial legends texts and I can see no plots at all.

My plot looks like this

I have tried modifying the scripts of phyloFlash_barplot.R with following options:

1. updated the theme in ggplot, theme(
   axis.text.x = element_text(angle = 45, hjust = 1, size = 10),
   legend.title = element_text(size = 7),
   legend.text = element_text(size = 6),
   legend.key.size = unit(0.3, "cm"),
   legend.spacing.y = unit(0.2, "cm"),
   legend.position = "right"
   ),

It is not working.

2. I changed 80 with 200 for this code width <- 360 + conf$options$scaleplotwidth[1] * 80 * num.samples. But it still does not work.