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101 lines (100 loc) · 2.9 KB
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# Generated by roxygen2: do not edit by hand
S3method(asJSON,Headers)
S3method(asJSON,MassSpecAnalysis)
S3method(asJSON,ProcessingSettings)
S3method(export,ProcessingSettings)
S3method(validate,Headers)
S3method(validate,MassSpecAnalysis)
S3method(validate,ProcessingSettings)
export("%>%")
export(Headers)
export(MassSpecAnalysis)
export(MassSpecData)
export(ProcessingSettings)
export(as.Headers)
export(as.MassSpecAnalysis)
export(as.ProcessingSettings)
export(convert_ms_files)
export(get_default_ProcessingSettings)
export(import_MassSpecData)
export(make_ms_targets)
export(parse.MassSpecAnalysis)
export(save_default_ProcessingSettings)
export(trim_ms_files_spectra)
import(R6)
importFrom(RColorBrewer,brewer.pal)
importFrom(Rcpp,sourceCpp)
importFrom(Rdpack,reprompt)
importFrom(base64enc,base64decode)
importFrom(data.table,CJ)
importFrom(data.table,`:=`)
importFrom(data.table,as.data.table)
importFrom(data.table,between)
importFrom(data.table,copy)
importFrom(data.table,data.table)
importFrom(data.table,fread)
importFrom(data.table,is.data.table)
importFrom(data.table,rbindlist)
importFrom(data.table,setDTthreads)
importFrom(data.table,setcolorder)
importFrom(data.table,setnafill)
importFrom(data.table,setnames)
importFrom(data.table,setorder)
importFrom(doParallel,registerDoParallel)
importFrom(dplyr,count)
importFrom(foreach,`%dopar%`)
importFrom(foreach,foreach)
importFrom(foreach,registerDoSEQ)
importFrom(grDevices,colorRamp)
importFrom(grDevices,colorRampPalette)
importFrom(graphics,axis)
importFrom(graphics,legend)
importFrom(graphics,lines)
importFrom(graphics,points)
importFrom(graphics,polygon)
importFrom(graphics,rect)
importFrom(graphics,text)
importFrom(gtools,getDependencies)
importFrom(jsonlite,fromJSON)
importFrom(jsonlite,toJSON)
importFrom(magrittr,"%>%")
importFrom(mzR,chromatogramHeader)
importFrom(mzR,chromatograms)
importFrom(mzR,close)
importFrom(mzR,header)
importFrom(mzR,instrumentInfo)
importFrom(mzR,nChrom)
importFrom(mzR,openMSfile)
importFrom(mzR,peaks)
importFrom(mzR,runInfo)
importFrom(parallel,clusterExport)
importFrom(parallel,detectCores)
importFrom(parallel,makeCluster)
importFrom(parallel,stopCluster)
importFrom(parallelly,supportsMulticore)
importFrom(plotly,add_annotations)
importFrom(plotly,add_lines)
importFrom(plotly,add_segments)
importFrom(plotly,add_trace)
importFrom(plotly,group_by)
importFrom(plotly,hide_colorbar)
importFrom(plotly,hide_legend)
importFrom(plotly,layout)
importFrom(plotly,plot_ly)
importFrom(plotly,subplot)
importFrom(plotly,toRGB)
importFrom(plyr,round_any)
importFrom(stats,cor)
importFrom(stats,sd)
importFrom(tools,file_ext)
importFrom(utils,packageVersion)
importFrom(utils,setTxtProgressBar)
importFrom(utils,txtProgressBar)
importFrom(xml2,read_xml)
importFrom(xml2,xml_attr)
importFrom(xml2,xml_child)
importFrom(xml2,xml_find_all)
importFrom(xml2,xml_find_first)
importFrom(xml2,xml_name)
importFrom(xml2,xml_text)
useDynLib(streamFind, .registration=TRUE)