Predict Topt from protein sequence and OGT

[yanshouyu]

Currently we can only get pre-calculated Topt from BLAST results. It would be very handy to predict the Topt directly from the protein sequence (or AA frequency) and OGT calculated in predOGT, using the RF regressor already trained but not provided in this package.

[mengqvist]

I agree that this would be handy. I will mark this as an enhancement and hope to get back to it when time allows.

[SheridanPO]

This would be very useful! Do you have any idea when you will get a chance to add this?

[MdUmar-tech]

When i use this command
tome predOGT --fasta test/proteomes/pyrococcus_horikoshii.fasta
I m getting error message
.
ImportError: cannot import joblib from 'sklearn.externals (C:\ProgramData\Anaconda3\lib\site-packages\sklearn\externals\joblib__init__.py)
Plese solve

[feiranl]

@MdUmar-tech You can change the import function in predOGT.py, instead of from sklearn.externals import joblib but use

import sklearn.externals
import joblib

[MdUmar-tech]

Thank you