MAINT: upgrade lock files (#554)

* BEHAVIOR: remove extras from `test` dependency group
* DOC: disable full-screen button on website
* DOC: write Issues instead of Tracker in PyPI
* DX: hide Sphinx deprecation warnings
* DX: run all CI tasks through `poe`
* DX: switch to `ty` as type checker
* DX: use Poe the Poet executor options
* ENH: automatically update `test-all` job
* ENH: generalize function signatures
* FIX: collect doctests
* FIX: install extras for `pytest`
* FIX: relink `sp.Basic`
* FIX: support arbitrary functions in `get_source_code()`
* MAINT: address Ruff issues
* MAINT: apply Prettier formatting to notebooks
* MAINT: fix intersphinx problems
* MAINT: ignore `np.object` warning
* MAINT: implement updates from auto-formatters
* MAINT: improve typing of symbols
* MAINT: remove `nbmake`, `poethepoet`, and `sphinx-autobuild`
* MAINT: upgrade lock files and workflows
* MAINT: upgrade developer config

Author: pre-commit-ci[bot]

.cspell.json

@@ -24,6 +24,7 @@
     "*.ico",
     ".editorconfig",
     ".envrc",
+    ".github/dependabot.yml",
     ".gitignore",
     ".pre-commit-config.yaml",
     ".prettierignore",
@@ -33,12 +34,10 @@
     "CITATION.cff",
     "codecov.yml",
     "docs/conf.py",
-    "pyproject.toml",
-    "typings"
+    "pyproject.toml"
   ],
   "ignoreWords": [
     "FURB",
-    "MAINT",
     "Nelder",
     "PYDEVD",
     "absl",
@@ -145,7 +144,6 @@
     "pypi",
     "pyplot",
     "pyproject",
-    "pyright",
     "pytestconfig",
     "qrules",
     "rightarrow",
@@ -186,6 +184,7 @@
   "useGitignore": true,
   "version": "0.2",
   "words": [
+    "analyticity",
     "backends",
     "blatt",
     "bottomness",
@@ -219,7 +218,6 @@
     "mathbb",
     "matplotlib",
     "mkdir",
-    "mypy",
     "nishijima",
     "numpy",
     "optimizable",

.github/dependabot.yml

@@ -0,0 +1,19 @@
+version: 2
+
+multi-ecosystem-groups:
+  lock:
+    assignees: [redeboer]
+    commit-message: { prefix: MAINT }
+    schedule: { interval: quarterly }
+
+updates:
+  - package-ecosystem: github-actions
+    directory: "/"
+    labels: [⬆️ Lock]
+    multi-ecosystem-group: lock
+    patterns: ["*"]
+  - package-ecosystem: uv
+    directory: "/"
+    labels: [⬆️ Lock]
+    multi-ecosystem-group: lock
+    patterns: ["*"]

.github/workflows/benchmark.yml

@@ -12,44 +12,21 @@ on:
       - main
       - epic/*
   workflow_dispatch:
-    inputs:
-      specific-pip-packages:
-        description: Run benchmarks with specific pip packages
-        required: false
-        type: string
 
 jobs:
   benchmark:
     name: Performance regression
     runs-on: ubuntu-24.04
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@v6
         with:
           fetch-depth: 0
-      - uses: actions/setup-python@v5
+      - uses: actions/setup-python@v6
         with:
           python-version: "3.13"
-      - uses: astral-sh/setup-uv@v6
-      - id: with
-        if: inputs.specific-pip-packages
-        name: Determine additional packages to install
-        run: |
-          additional_packages=''
-          for package in ${{ inputs.specific-pip-packages }}; do
-            additional_packages="$additional_packages --with $package"
-          done
-          echo "packages=$additional_packages" | tee -a $GITHUB_OUTPUT
+      - uses: astral-sh/setup-uv@v7
       - name: Run pytest-benchmark
-        run: |
-          uv run \
-            --group test \
-            --no-dev \
-            ${{ steps.with.outputs.packages }} \
-            pytest \
-              -k benchmark \
-              --benchmark-json output.json \
-              --durations=0
-        working-directory: benchmarks
+        run: uvx --from poethepoet poe benchmark
       - name: Warn on performance decrease
         if: github.event_name == 'pull_request'
         uses: benchmark-action/github-action-benchmark@v1

.github/workflows/cd.yml

@@ -9,9 +9,9 @@ on:
 jobs:
   milestone:
     if: startsWith(github.ref, 'refs/tags')
-    uses: ComPWA/actions/.github/workflows/close-milestone.yml@v3
+    uses: ComPWA/actions/.github/workflows/close-milestone.yml@v4
   package-name:
-    uses: ComPWA/actions/.github/workflows/get-pypi-name.yml@v3
+    uses: ComPWA/actions/.github/workflows/get-pypi-name.yml@v4
   pypi:
     environment:
       name: PyPI
@@ -24,9 +24,9 @@ jobs:
       id-token: write
     runs-on: ubuntu-24.04
     steps:
-      - uses: ComPWA/actions/build-pypi-distribution@v3
+      - uses: ComPWA/actions/build-pypi-distribution@v4
       - uses: pypa/gh-action-pypi-publish@release/v1
   push:
     if: startsWith(github.ref, 'refs/tags') && !github.event.release.prerelease
     secrets: inherit
-    uses: ComPWA/actions/.github/workflows/push-to-version-branches.yml@v3
+    uses: ComPWA/actions/.github/workflows/push-to-version-branches.yml@v4

.github/workflows/ci.yml

@@ -17,33 +17,25 @@ on:
       - epic/*
       - "[0-9]+.[0-9]+.x"
   workflow_dispatch:
-    inputs:
-      specific-pip-packages:
-        description: Run CI with specific pip packages
-        required: false
-        type: string
 
 jobs:
   doc:
-    uses: ComPWA/actions/.github/workflows/ci-docs.yml@v3.0
+    uses: ComPWA/actions/.github/workflows/ci-docs.yml@v4.0
     permissions:
       pages: write
       id-token: write
     with:
       apt-packages: graphviz
-      specific-pip-packages: ${{ inputs.specific-pip-packages }}
-  pytest:
-    uses: ComPWA/actions/.github/workflows/pytest.yml@v3.0
+  style:
+    secrets:
+      token: ${{ secrets.PAT }}
+    uses: ComPWA/actions/.github/workflows/style.yml@v4.0
+  test:
+    uses: ComPWA/actions/.github/workflows/test.yml@v4.0
+    secrets:
+      CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
     with:
-      coverage-target: tensorwaves
+      coverage-python-version: "3.13"
       macos-python-version: "3.10"
       multithreaded: false
-      specific-pip-packages: ${{ inputs.specific-pip-packages }}
       test-output-path: tests/output/
-    secrets:
-      CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
-  style:
-    if: inputs.specific-pip-packages == ''
-    secrets:
-      token: ${{ secrets.PAT }}
-    uses: ComPWA/actions/.github/workflows/pre-commit.yml@v3.0

.github/workflows/clean-caches.yml

@@ -14,9 +14,9 @@ on:
 jobs:
   cleanup:
     name: Remove caches
-    runs-on: ubuntu-24.04
+    runs-on: ubuntu-slim
     steps:
-      - uses: ComPWA/actions/clean-caches@v3
+      - uses: ComPWA/actions/clean-caches@v4
         with:
           GH_TOKEN: ${{ secrets.GITHUB_TOKEN }}
           ref: ${{ inputs.ref }}

.github/workflows/lock.yml

@@ -17,6 +17,6 @@ on:
 
 jobs:
   lock:
-    uses: ComPWA/actions/.github/workflows/lock.yml@v3
+    uses: ComPWA/actions/.github/workflows/lock.yml@v4
     secrets:
       token: ${{ secrets.PAT }}

.github/workflows/pr-linting.yml

@@ -11,4 +11,4 @@ on:
 
 jobs:
   lint-pr:
-    uses: ComPWA/actions/.github/workflows/pr-linting.yml@v3
+    uses: ComPWA/actions/.github/workflows/pr-linting.yml@v4

.github/workflows/redirect-gh-pages.yml

@@ -7,7 +7,7 @@ on:
 
 jobs:
   build:
-    runs-on: ubuntu-24.04
+    runs-on: ubuntu-slim
     steps:
       - name: Build redirect page
         id: build

.github/workflows/release-drafter.yml

@@ -9,7 +9,7 @@ on:
 
 jobs:
   update_release_draft:
-    runs-on: ubuntu-24.04
+    runs-on: ubuntu-slim
     steps:
       - uses: release-drafter/release-drafter@v6
         env: