Genome

[Nuturetree]

Hi author
I want know how can i using other genome (eg: cotton)
thanks
Nuturetree

[Nuturetree]

I find you call “TxDb.Hsapiens.UCSC.hg19.knownGene.rds” as genome, if the file from gtf file?

[YuanlongLiu]

Hi, It is from https://bioconductor.org/packages/release/data/annotation/html/TxDb.Hsapiens.UCSC.hg19.knownGene.html Including other genomes is under development. I can send you a trial version if you want. Best, Y.L

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[Nuturetree]

Hi author:
The CALDER is a useful tool. I would very much like to be able to use it properly. Thank you for your answer. Can this training version help me to identify the subcompartment structure of species other than humans?
Best,
Nuturetree

[YuanlongLiu]

Have a check of CALDER2.0, added support for other genomes