Since 5a21063, BiobjectiveNondominatedSortedList creates its list first and only then prunes it. As pruning is $\cal O(n)$ for each pruned element (as suggested in this now deleted comment),
self.append(f_pair) # this is O(1) whereas prune is O(n) for each pruned element
this makes the constructor $\cal O(n^2)$ when a constant fraction of points is dominated whereas it was $\cal O(n)$ before?
Since 5a21063,$\cal O(n)$ for each pruned element (as suggested in this now deleted comment),
BiobjectiveNondominatedSortedListcreates itslistfirst and only then prunes it. As pruning isthis makes the constructor$\cal O(n^2)$ when a constant fraction of points is dominated whereas it was $\cal O(n)$ before?