From 07290b2403d4b6a7434084f9d65290f0a1d15268 Mon Sep 17 00:00:00 2001 From: lcoombe Date: Thu, 28 May 2026 12:33:02 -0700 Subject: [PATCH] Ensure that first synteny block has reason "None" --- bin/ntsynt_synteny.py | 1 + 1 file changed, 1 insertion(+) diff --git a/bin/ntsynt_synteny.py b/bin/ntsynt_synteny.py index c051bc5..0302edd 100644 --- a/bin/ntsynt_synteny.py +++ b/bin/ntsynt_synteny.py @@ -455,6 +455,7 @@ def merge_collinear_blocks(self, blocks): "Merge collinear blocks that are less than threshold apart, and are not indels" out_blocks = [] curr_block = blocks[0] + curr_block.broken_reason = None for block in blocks[1:]: orientations = True # Are the orientations all the same? contig_id = True # Are the contig IDs all the same?