diff --git a/bin/ntsynt_synteny.py b/bin/ntsynt_synteny.py index c051bc5..0302edd 100644 --- a/bin/ntsynt_synteny.py +++ b/bin/ntsynt_synteny.py @@ -455,6 +455,7 @@ def merge_collinear_blocks(self, blocks): "Merge collinear blocks that are less than threshold apart, and are not indels" out_blocks = [] curr_block = blocks[0] + curr_block.broken_reason = None for block in blocks[1:]: orientations = True # Are the orientations all the same? contig_id = True # Are the contig IDs all the same?