Maybe it would be nice to request only one file in the units.tsv.
This would make the pipeline compatible with single-end reads. Therefore one should only give either the R1 or the R2 but not both when sequencing pair-end. This should does not add difficulties to the user since one already have to tell the pipeline in which file the feature barcode is (lines 8-9 of config/larry_config.yaml).
We would have to modify the workflow/rules/prepare_fastqs.smk, and maybe other files too.
Maybe it would be nice to request only one file in the
units.tsv.This would make the pipeline compatible with single-end reads. Therefore one should only give either the R1 or the R2 but not both when sequencing pair-end. This should does not add difficulties to the user since one already have to tell the pipeline in which file the feature barcode is (lines 8-9 of
config/larry_config.yaml).We would have to modify the
workflow/rules/prepare_fastqs.smk, and maybe other files too.