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When I try cor, I get errors like Error in cor(DelayedArray(x), DelayedArray(y)) : 'x' must be numeric. Am I missing something simple?
If it's not implemented, I have a little function for this and I could send a pull request.
#' Drop-in replacement for cov or cor; tolerates DelayedArray input. Pearson correlation only.
#'
delayedCov = function(x, y = x, do_cor = F){
mux = colMeans(x)
muy = colMeans(y)
zx = sweep(x, 2, mux, "-")
zy = sweep(y, 2, muy, "-")
covxy = t(zx) %*% zy
covxy = covxy / nrow(x)
if(do_cor){
sx = sqrt(colMeans(zx^2))
sy = sqrt(colMeans(zy^2))
covxy = Matrix::Diagonal(x = 1/sx) %*% covxy %*% Matrix::Diagonal(x = 1/sy)
}
covxy
}
# tests
x = matrix(rnorm(1000), ncol = 10)
y = matrix(rnorm(1000), ncol = 10)
plot(delayedCov(x, y), cov(x, y)); abline(a = 0, b = 1)
plot(delayedCov(x, y, do_cor = T), cor(x, y)); abline(a = 0, b = 1)
plot(delayedCov(DelayedArray(x), DelayedArray(y), do_cor = T), cor(x, y)); abline(a = 0, b = 1)
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