Conda Installation Error [LibMambaUnsatisfiableError]

[erfanshekarriz]

Hello!

I wanted to report that the conda installation is not currently working when setting strict repo priority:

conda env create -f HVSeeker_DNA_environment.yml --name HVSeekerDNA

I get the following error:

Retrieving notices: ...working... done
Channels:
 - conda-forge
 - pytorch
 - nvidia
 - anaconda
 - bioconda
 - defaults
Platform: linux-64
Collecting package metadata (repodata.json): done
Solving environment: failed
Channels:
 - conda-forge
 - pytorch
 - nvidia
 - anaconda
 - bioconda
 - defaults
Platform: linux-64
Collecting package metadata (repodata.json): done
Solving environment: failed

LibMambaUnsatisfiableError: Encountered problems while solving:
  - package tensorflow-base-2.12.0-mkl_py39he5f8e37_0 is excluded by strict repo priority
  - package tensorflow-estimator-2.12.0-py39h06a4308_0 is excluded by strict repo priority
  - package tensorflow-2.12.0-mkl_py39h5ea9445_0 is excluded by strict repo priority

My system information:

NAME="CentOS Linux"
VERSION="7 (Core)"
ID="centos"
ID_LIKE="rhel fedora"
VERSION_ID="7"
PRETTY_NAME="CentOS Linux 7 (Core)"
ANSI_COLOR="0;31"
CPE_NAME="cpe:/o:centos:centos:7"
HOME_URL="https://www.centos.org/"
BUG_REPORT_URL="https://bugs.centos.org/"

CENTOS_MANTISBT_PROJECT="CentOS-7"
CENTOS_MANTISBT_PROJECT_VERSION="7"
REDHAT_SUPPORT_PRODUCT="centos"
REDHAT_SUPPORT_PRODUCT_VERSION="7"

LSB Version:    :core-4.1-amd64:core-4.1-noarch:cxx-4.1-amd64:cxx-4.1-noarch:desktop-4.1-amd64:desktop-4.1-noarch:languages-4.1-amd64:languages-4.1-noarch:printing-4.1-amd64:printing-4.1-noarch
Distributor ID: CentOS
Description:    CentOS Linux release 7.6.1810 (Core) 
Release:        7.6.1810
Codename:       Core

For reproducibility in this case, a strict repo priority conda config --set channel_priority strict would be required. I understand that Docker is available in these cases for full reproducibility, but I wanted to ask if there will be a conda environment setup on repositories such as bioconda any time soon!

Cheers,
Erfan

[bgruening]

Please try following https://bioconda.github.io/#usage

You have too many channels activated, in a wrong order. Please correct that and try again.

[erfanshekarriz]

Please try following https://bioconda.github.io/#usage

You have too many channels activated, in a wrong order. Please correct that and try again.

Hello,

Thank you for your reply,

I've followed your installation instructions exactly. The channels are pre-determined in the HVSeeker_DNA_environment.yml file that you've provided.

If not all channels are required in the installation of HVSeeker_DNA_environment.yml, I recommend you remove them from the .yml files.

Cheers,