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<!DOCTYPE html>
<html lang="en">
<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no" />
<meta name="description" content="" />
<meta name="author" content="" />
<title>Amulya Shastry</title>
<link rel="icon" type="image/x-icon" href="assets/favicon.ico" />
<!-- Font Awesome icons (free version)-->
<script src="https://use.fontawesome.com/releases/v5.15.3/js/all.js" crossorigin="anonymous"></script>
<script src='https://kit.fontawesome.com/a076d05399.js' crossorigin='anonymous'></script>
<!-- Google fonts-->
<link href="https://fonts.googleapis.com/css?family=Montserrat:400,700" rel="stylesheet" type="text/css" />
<link href="https://fonts.googleapis.com/css?family=Roboto+Slab:400,100,300,700" rel="stylesheet" type="text/css" />
<!-- Core theme CSS (includes Bootstrap)-->
<link href="css/styles.css" rel="stylesheet" />
</head>
<body id="page-top">
<!-- Navigation-->
<nav class="navbar navbar-expand-lg navbar-dark fixed-top" id="mainNav">
<div class="container">
<a class="navbar-brand js-scroll-trigger" href="#page-top">Amulya Shastry</a>
<button class="navbar-toggler navbar-toggler-right" type="button" data-toggle="collapse" data-target="#navbarResponsive" aria-controls="navbarResponsive" aria-expanded="false" aria-label="Toggle navigation">
Menu
<i class="fas fa-bars ml-1"></i>
</button>
<div class="collapse navbar-collapse" id="navbarResponsive">
<ul class="navbar-nav text-uppercase ml-auto">
<li class="nav-item"><a class="nav-link js-scroll-trigger" href="#Skills">Skills</a></li>
<li class="nav-item"><a class="nav-link js-scroll-trigger" href="#Projects">Projects</a></li>
<li class="nav-item"><a class="nav-link js-scroll-trigger" href="#Education">Education</a></li>
<li class="nav-item"><a class="nav-link js-scroll-trigger" href="#Experience">Experience</a></li>
<li class="nav-item"><a class="nav-link js-scroll-trigger" href="#Blogs">Blogs</a></li>
<li class="nav-item"><a class="nav-link js-scroll-trigger" href="#Contact">Contact</a></li>
</ul>
</div>
</div>
</nav>
<!-- Masthead-->
<header class="masthead">
<div class="container">
<div class="scrollbar">
<div class="masthead-subheading">Hi! I am Amulya Shastry</div>
<div class="item">
<img class="square" src="assets/img/logos/Amulya.jpg" alt="hi" width="400" height="400" />
<p style="font-size:20px">Pronouns - She/her/hers</p>
<p style="font-size:20px">Here is how to say my name</p>
<i style="padding-bottom:20px; font-size:40px" class="far fa-hand-point-down"></i>
</div>
<audio controls>
<source src="audio/Name.mp4" type="audio/mp4">
</audio>
<h5 style="padding-top:20px; padding-bottom:20px;">I am a Bioinformatics analyst who works with large genomics datasets, builds cool analysis pipelines/plugins integrating wide range of bioinformatics tools and, applies statistical models to make sense of the data. I enjoy building and presenting beautiful data visualizations</h6>
<a class="btn btn-primary btn-xl text-uppercase js-scroll-trigger" style="background-color:#1A5276" href="#Skills">Tell Me More</a>
</div>
</div>
</header>
<!-- Skills-->
<section class="page-section" id="Skills">
<div class="container">
<div class="text-center">
<h2 class="section-heading text-uppercase">Skills</h2>
<h3 class="section-subheading text-muted">Bioinformatics skills and expertise</h3>
</div>
<div class="row text-center">
<div class="col-md-4">
<span class="fa-stack fa-lg">
<i class="fa fa-dna fa-stack-1x center" style='font-size:62'></i>
</span>
<h4 class="my-3">NGS data analysis</h4>
<ul><i class="fa fa-hand-point-right"></i>WGS Analysis</ul>
<ul><i class="fa fa-hand-point-right"></i>16S Analysis</ul>
<ul><i class="fa fa-hand-point-right"></i>RNA-Seq Analysis</ul>
</span>
</div>
<div class="col-md-4">
<span class="fa-stack fa-lg">
<i class="fas fa-laptop fa-stack-1x" style='font-size:62'></i>
</span>
<h4 class="my-3"> Programming Skills</h4>
<i class="fab fa-r-project" style='color:Blue; font-size:55' ></i>
<i class="fab fa-python" style='color:Teal; font-size:55' ></i>
<i class="fab fa-linux" style='font-size:55' ></i>
<img class="mx-auto" style='padding=bottom:20px' src="assets/img/logos/html.jpg" alt"..." width="45" height="60" />
<img class="mx-auto" style='padding-bottom:20px' src="assets/img/logos/biopython.jpg" alt="..." width="45" height="60" />
<img class="mx-auto" style='padding-bottom:20px' src="assets/img/logos/perl.png" alt="..." width="45" height="60"/>
</div>
<div class="col-md-4">
<span class="fa-stack fa-lg">
<i class="fas fa-sitemap fa-stack-1x" style='font-size:62'></i>
</span>
<h4 class="my-3">Workflow Management Systems</h4>
<img class="mx-auto rounded-circle" src="assets/img/logos/snakemake.png" alt="..." width="50" height="50" />
<img class="mx-auto rounded-circle" src="assets/img/logos/drake.png" alt="..." width="50" height="50" />
</div>
<div class="col-md-4">
<span class="fa-stack fa-lg">
<i class="fas fa-box-open fa-stack-1x" style='font-size:62; padding-top:20px'></i>
</span>
<h4 class="my-3">Containers</h4>
<img class="mx-auto rounded-circle" src="assets/img/logos/Singularity.png" alt="..." width="50" height="50" />
<img class="mx-auto" src="assets/img/logos/Docker.png" alt="..." width="50" height="50" />
</div>
<div class="col-md-4">
<span class="fa-stack fa-lg">
<i class="fas fa-server fa-stack-1x" style='font-size:62; padding-top:20px'></i>
</span>
<h4 class="my-3">Job handlers, Servers and Environment manager</h4>
<img class="mx-auto" src="assets/img/logos/slurm.jpg" alt="..." width="100" height="50" />
<img class="mx-auto" src="assets/img/logos/aws.png" alt="..." width="100" height="50" />
<img class="mx-auto" src="assets/img/logos/conda.png" alt="..." width="100" height="50"/>
</div>
<div class="col-md-4">
<span class="fa-stack fa-lg">
<i class="fas fa-tools fa-stack-1x" style='font-size:62; padding-top:20px'></i>
</span>
<h4 class="my-3">Tools and Pacakges </h4>
<img class="mx-auto" src="assets/img/logos/numpy.png" alt="..." width="50" height="50"/>
<img class="mx-auto" src="assets/img/logos/pandas.png" alt="..." width="50" height="50"/>
<img class="mx-auto" src="assets/img/logos/tidyverse.png" alt="..." width="50" height="50" />
<img class="mx-auto" src="assets/img/logos/deseq2.png" alt="..." width="50" height="50" />
<img class="mx-auto" src="assets/img/logos/qiime.png" alt="..." width="50" height="50" />
<img class="mx-auto" src="assets/img/logos/dada2.png" alt="..." width="50" height="50" />
<p class="text-muted"></p>
</div>
</div>
</div>
</section>
<!-- Portfolio Grid-->
<section class="page-section bg-light" id="Projects">
<div class="container">
<div class="text-center">
<h2 class="section-heading text-uppercase">Projects</h2>
<h3 class="section-subheading text-muted">Bioinformatics projects over the course of years</h3>
</div>
<div class="row">
<div class="col-lg-4 col-sm-6 mb-4">
<div class="portfolio-item">
<a class="portfolio-link" data-toggle="modal" href="#portfolioModal1">
<div class="portfolio-hover">
<div class="portfolio-hover-content"><i class="fas fa-plus fa-3x"></i></div>
</div>
<img class="img-fluid" src="assets/img/portfolio/01-thumbnail.jpg" alt="..." />
</a>
<div class="portfolio-caption">
<div class="portfolio-caption-heading">16S analysis</div>
<div class="portfolio-caption-subheading text-muted">Human and Mouse</div>
</div>
</div>
</div>
<div class="col-lg-4 col-sm-6 mb-4">
<div class="portfolio-item">
<a class="portfolio-link" data-toggle="modal" href="#portfolioModal2">
<div class="portfolio-hover">
<div class="portfolio-hover-content"><i class="fas fa-plus fa-3x"></i></div>
</div>
<img class="img-fluid" src="assets/img/portfolio/02-thumbnail.jpg" alt="..." />
</a>
<div class="portfolio-caption">
<div class="portfolio-caption-heading">RNA-Seq analysis</div>
<div class="portfolio-caption-subheading text-muted">Whole tissue RNA-Seq</div>
</div>
</div>
</div>
<div class="col-lg-4 col-sm-6 mb-4">
<div class="portfolio-item">
<a class="portfolio-link" data-toggle="modal" href="#portfolioModal3">
<div class="portfolio-hover">
<div class="portfolio-hover-content"><i class="fas fa-plus fa-3x"></i></div>
</div>
<img class="img-fluid" src="assets/img/portfolio/03-thumbnail.jpg" alt="..." />
</a>
<div class="portfolio-caption">
<div class="portfolio-caption-heading">Docker Containers</div>
<div class="portfolio-caption-subheading text-muted">Building containers for NGS analysis</div>
</div>
</div>
</div>
<div class="col-lg-4 col-sm-6 mb-4 mb-lg-0">
<div class="portfolio-item">
<a class="portfolio-link" data-toggle="modal" href="#portfolioModal4">
<div class="portfolio-hover">
<div class="portfolio-hover-content"><i class="fas fa-plus fa-3x"></i></div>
</div>
<img class="img-fluid" src="assets/img/portfolio/04-thumbnail.jpg" alt="..." />
</a>
<div class="portfolio-caption">
<div class="portfolio-caption-heading">Whole Genome Sequencing analysis</div>
<div class="portfolio-caption-subheading text-muted">Analysis of Human and HPV genomes</div>
</div>
</div>
</div>
<div class="col-lg-4 col-sm-6 mb-4 mb-sm-0">
<div class="portfolio-item">
<a class="portfolio-link" data-toggle="modal" href="#portfolioModal5">
<div class="portfolio-hover">
<div class="portfolio-hover-content"><i class="fas fa-plus fa-3x"></i></div>
</div>
<img class="img-fluid" src="assets/img/portfolio/05-thumbnail.jpg" alt="..." />
</a>
<div class="portfolio-caption">
<div class="portfolio-caption-heading">Pipeline development</div>
<div class="portfolio-caption-subheading text-muted">Development of pipelines using work flow management systems</div>
</div>
</div>
</div>
<div class="col-lg-4 col-sm-6">
<div class="portfolio-item">
<a class="portfolio-link" data-toggle="modal" href="#portfolioModal6">
<div class="portfolio-hover">
<div class="portfolio-hover-content"><i class="fas fa-plus fa-3x"></i></div>
</div>
<img class="img-fluid" src="assets/img/portfolio/06-thumbnail.jpg" alt="..." />
</a>
<div class="portfolio-caption">
<div class="portfolio-caption-heading">Plugin development</div>
<div class="portfolio-caption-subheading text-muted">Custom plugin for HPV analysis</div>
</div>
</div>
</div>
</div>
</div>
</section>
<!-- Education-->
<section class="page-section" id="Education">
<div class="container">
<div class="text-center">
<h2 class="section-heading text-uppercase">Education</h2>
<h3 class="section-subheading text-muted">Degrees and Institutions</h3>
</div>
<ul class="timeline">
<li>
<div class="timeline-image"><img class="rounded-circle img-fluid" src="assets/img/about/1.jpg" alt="..." /></div>
<div class="timeline-panel">
<div class="timeline-heading">
<h4>2011-2015</h4>
<h4 class="subheading">Bachelors of Engineering in Biotechnology</h4>
</div>
<div class="timeline-body"><p class="text-muted">Completed degree from Visweswaraya Technological University (Bapuji Institute of Engineering and Technology) with highest honors</p></div>
</div>
</li>
<li class="timeline-inverted">
<div class="timeline-image"><img class="rounded-circle img-fluid" src="assets/img/about/2.jpg" alt="..." /></div>
<div class="timeline-panel">
<div class="timeline-heading">
<h4>2016-2018</h4>
<h4 class="subheading">Masters of Science in Bioinformatics</h4>
</div>
<div class="timeline-body"><p class="text-muted">Northeastern University, College of Science, Boston, MA</p></div>
</div>
</li>
<li>
<div class="timeline-image"><img class="rounded-circle img-fluid" src="assets/img/about/3.jpg" alt="..." /></div>
<div class="timeline-panel">
<div class="timeline-heading">
<h4>September 2021</h4>
<h4 class="subheading">Incoming Bioinformatics PhD student</h4>
</div>
<div class="timeline-body"><p class="text-muted">Boston University, MA</p></div>
</div>
</li>
<li class="timeline-inverted">
<div class="timeline-image">
<h4>
Future
<br>
Awaits!
</br>
</h4>
</div>
</li>
</ul>
</div>
</section>
<!-- Experience-->
<section class="page-section" id="Experience" class="body" style = "color: white;">
<div class = "containers">
<div class ="text" style ="background-image: url(assets/img/header-bg.jpg); background-size: cover;">
<h2 class="section-heading text-uppercase text-center" style= "mix-blend-mode: screen;">Experience</h2>
<h3 class="section-subheading text-muted text-center">Professional work experience</h3>
<h3 class="text-center text-uppercase" style= "color: #FFC300; text-uppercase;"> Full-time Work Experience </h3><br>
</br>
<div class= "buttonss" style ="border:none; display:grid; overflow:hidden; outline:none; color: white; cursor:pointer; border-radius: 12px; fontsize: 10px padding-bottom: 20px; ">
<button type="button" class="buttonss" style="background-color: #212F3C; border-radius: 10px; width:fit-content; margin:auto; color:white; font-size: 30px;">Bioinformatics Analyst II <i class="fas fa-bars"></i></button>
<div class="content" style="overflow:hidden; display:none; background-color: #8599b0;">
<p style="padding-bottom:40px; text-align:center; font-size:20px; ">
Fredrick National Laboratory For Cancer Research/Leidos Biomedical Research <br>
Oct 2019 - Present </br> </p>
</div>
<button type="button" class="buttonss" style="background-color: #212F3C; border-radius: 10px; color:white; width:fit-content; margin:auto; font-size: 30px">Bioinformatics Scientist I <i class="fas fa-bars"></i></button>
<div class="content" style="overflow:hidden; display:none; background-color: #8599b0;">
<p style="padding-bottom:40px; font-size:20px; text-align:center;">
Kelly Government Services <br>
Jul 2018 - June 2019</br></p> <br>
</br>
</div>
<h3 class="text-center text-uppercase" style="color: #FFC300; padding-top:40px; text-uppercase;"> Internship Experience </h3><br>
</br>
<button type="button" class="buttonss" style="background-color: #212F3C; border-radius: 10px; width:fit-content; margin:auto; color:white; font-size: 30px" >Bioinformatics Co-op <i class="fas fa-bars"></i></button>
<div class="content" style="overflow:hidden; display:none; background-color: #8599b0;">
<p style="padding-bottom:40px; font-size:20px; text-align:center;">
Brucker Lab, Rownland Institute at Harvard University <br>
June 2017 - Dec 2017</br></p>
</div>
<button type="button" class="buttonss" style="background-color: #212F3C; border-radius: 10px; width:fit-content; margin:auto; color:white; font-size: 30px">Bioinformatics Lab assistant <i class="fas fa-bars"></i></button>
<div class="content" style="overflow:hidden; display:none; background-color: #8599b0;">
<p style="padding-bottom:40px; font-size:20px; text-align:center; ">
Epstein Lab, Northeastern University <br>
Nov 2017 - Apr 2018</br></p>
</div>
<button type="button" class="buttonss" style="background-color: #212F3C; border-radius: 10px; width:fit-content; margin:auto; color:white; font-size: 30px" >Scientific data analyst intern <i class="fas fa-bars"></i></button>
<div class="content" style="overflow:hidden; display:none; background-color: #8599b0;">
<p style="padding-bottom:40px; font-size:20px; text-align:center; ">
Molecular Connections, Bangalore<br>
Oct 2015 - Apr 2016 </br></p>
</div>
<h3 class="text-center text-uppercase" style="color: #FFC300; padding-top:40px; text-uppercase;"> Clubs and Organizations </h3><br>
</br>
<button type="button" class="buttonss" style="background-color: #212F3C; border-radius: 10px; width:fit-content; margin:auto; color:white; font-size: 30px" > Vice-President, Student Academic Affairs <i class="fas fa-bars"></i></button>
<div class="content" style="overflow:hidden; display:none; background-color: #8599b0;">
<p style="padding-bottom:40px; font-size:20px; text-align:center;">
Graduate Student Government, Northeastern University<br>
Oct 2016 - June 2018</br></p>
</div>
<button type="button" class="buttonss" style="background-color: #212F3C; border-radius: 10px; width:fit-content; margin:auto; color:white; font-size: 30px" > Cultural head, Head of SAC <i class="fas fa-bars"></i></button>
<div class="content" style="overflow:hidden; display:none; background-color: #8599b0;">
<p style="padding-bottom:40px; font-size:20px; text-align:center;">
Student Academic Council, Bapuji Institute of Engineering and Technology, VTU, Davanagere<br>
2013 - 2014</br></p>
</div>
<button type="button" class="buttonss" style="background-color: #212F3C; border-radius: 10px; width:fit-content; margin:auto; color:white; font-size: 30px" > President, Rotary Interact Club <i class="fas fa-bars"></i></button>
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2006 - 2008</br></p>
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