ajgo is a commander application written in go that supports the AdamaJava Java tools available from https://github.com/AdamaJava/adamajava.
Usage:
ajgo [command]
Available Commands:
completion Generate the autocompletion script for the specified shell
genemodel Operations on gene models
genome Operations on genomes
gff3 Operations on GFF3 files
help Help about any command
ngscheck modes related to proprietary NGScheck tool
qmotif Operations related to the AdamaJava qmotif tool
qpileup Operations related to the AdamaJava qpileup tool
seed Operations on genome seeds
version print the ajgo version number
Flags:
--config string config file
-h, --help help for ajgo
--logfile string log file (defaults to STDERR if no file specified)
--loglevel string log level (default "INFO")
--verbose turn on verbose messaging
Additional help topics:
ajgo merge-gff3 principles of merging GFF3 files
ajgo selector help on selectors and their use
Use "ajgo [command] --help" for more information about a command.
Detailed submode documentation:
- ngscheck - modes related to proprietary NGScheck tool